Example
| Gene | NOTCH2NL | CALM2 | ECE2 | C4B |
|---|---|---|---|---|
| RefSeq Protein | NP_982283 | NP_001734 | NP_001032401 | NP_001002029 |
| RefSeq Nucleotide | NM_203458 | NM_001743 | NM_001037324 | NM_001002029 |
| (UniProt) Entry | {P0DPK4,Q7Z3S9} | {P0DP23,P0DP24,P0DP25} | {P0DPD6,P0DPD8} | {P0C0L4,P0C0L5} |
| Gene names | {NOTCH2NLC, (NOTCH2NLA N2N, NOTCH2NL)} | {CALM1, CALM2, CALM3} | {C4A,C4B} | |
| Idencial Sequences | True | True | False | False |
| isoform | {False,True} | {False,False,False} | {True,True(Reference:P0DPD6)} | {True,False} |
| PDB | {False, False} | {True,True,True} | {False,False} | {True, True} |
Alignment (e.g)
>sp|P0C0L4|CO4A_HUMAN FVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVA sp|P0C0L5|CO4B_HUMAN FVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDLSPVIHRSMQGGLVGNDETVA NP_001002029 FVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDLSPVIHRSMQGGLVGNDETVA *************************************** .**:.*************** Superimpose
| Superimpose result of FATCAT | Superimpose result of MultiProt |
4LZX:A|PDBID|CHAIN|SEQUENCE -----ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV sp|P0DP24|CALM2_HUMAN ----MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 5WSV:A|PDBID|CHAIN|SEQUENCE GPGSMADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV ******************************************************* 4LZX:A|PDBID|CHAIN|SEQUENCE DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK sp|P0DP24|CALM2_HUMAN DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK 5WSV:A|PDBID|CHAIN|SEQUENCE DADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK ************************************************************ 4LZX:A|PDBID|CHAIN|SEQUENCE LTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK sp|P0DP24|CALM2_HUMAN LTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 5WSV:A|PDBID|CHAIN|SEQUENCE LTDEEVDEMIREADIDGDGQVNYEEFVQMMT-- ******************************* Javascript Script For Displaying SuperImpose Results
fork ngl.js from https://github.com/arose/ngl
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document.addEventListener("DOMContentLoaded", function () {
var stage1 = new NGL.Stage("viewport1");
var stage2 = new NGL.Stage("viewport2");
stage1.loadFile("../../assets/data/5wsvA.4lzxA_FATCAT.pdb", {defaultRepresentation: true});
stage2.loadFile("../../assets/data/5wsvA.4lzxA_MultiProt.pdb").then(function (o) {
o.addRepresentation("cartoon", { color: "modelindex" }),
o.autoView()
});
stage1.spinAnimation.axis.set(0, 1, 0);
stage1.setSpin(true);
stage2.spinAnimation.axis.set(1, 0, 0);
stage2.setSpin(true);
});